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By M. Killian. Albright College.
Top2A expression levels are major determinants of response to the topoisomerase-2 poison doxorubicin and suppression of Top2A produces resistance to doxorubicin order furosemide 100mg on line heart attack 35. Suppression of Top1 produces resistance to the topoisomerase 1 poison camptoth- ecin but hypersensitizes cancer cells to doxorubicin furosemide 100 mg lowest price blood pressure 5332. Despite these positive response rates, a subset of patients do not respond to Gleevec therapy fully or at all, and approximately 4–5 % of successfully treated patients annually develop resistance to Gleevec during therapy with a return of their disease manifestations. Results from such a test may assist physicians in predicting patient relapse before it happens and making appropriate adjustments in treatment. Developing additional Abl kinase inhibitors would be useful as a treatment strategy for chronic myelogenous leuke- mia. Treatment would be individualized for each patient, by combining specific inhibitors in an ‘inhibitor cocktail’ that would be able to combat various Bcr-Abl isoforms. Knowledge of downstream medi- ators of resistance may lead to the development of rational combinations to prevent or treat resistant disease. Recurrent tumor cells have few phe- notypical differences from those in tumors prior to surgery. An alternative explana- tion proposed for the resistance of recurrent tumors is that surgery promotes inhibitory factors that allow lingering immunosuppressive cells to repopulate small Universal Free E-Book Store Personalized Therapy of Cancer Metastases 277 pockets of residual disease quickly (Predina et al. This complex network of immunosuppression in the tumor microenvironment explains the resistance of tumor recurrences to con- ventional cancer vaccines despite small tumor size, an intact antitumor immune response, and unaltered cancer cells. Therapeutic strategies coupling anticancer agents with inhibition of immunosuppressive cells potentially could impact the out- comes in these patients. Systems biology approaches lend themselves to rapid in silico testing of factors, which may confer resistance to tar- geted therapies. The model includes parameters based on quantitative phosphoprotein expression data from cancer cell lines using reverse-phase protein microarrays. Personalized Therapy of Cancer Metastases Metastasis is the major cause of mortality in cancer. Primary tumors tend to metas- tasize to defined subsets of secondary organs, but the underlying mechanisms are not well understood. A microfluidic 3D in vitro model was developed to analyze organ-specific human breast cancer cell extravasation into bone- and muscle- mimicking microenvironments through a microvascular network (Jeon et al. Extravasation rates and microvasculature permeabilities in the bone-mimicking Universal Free E-Book Store 278 10 Personalized Therapy of Cancer microenvironment were significantly different from those in myoblast containing matrices. Blocking breast cancer cell A3 adenosine receptors resulted in higher extravasation rates of cancer cells into the myoblast-containing matrices compared with untreated cells, suggesting a role for adenosine in reducing extravasation. These results show the usefulness of microfluidic 3D model as a drug screening platform and a promising tool for investigating specific molecular pathways involved in cancer biology, with potential applications to personalized medicine. Personalized Management of Cancers of Various Organs Personalized Management of Brain Tumors Brain tumors can be benign or malignant, with the latter being more frequent. Several innovative treatments are being developed but the mainstays of conventional treatment are che- motherapy and radiation. There is need for the development of personalized treatment modalities to address the heterogeneity of this complex tumor phenotype. A search of alternative treatments for glioblastoma multiforme will test this approach. The sequencing normally takes 10–12 days because of the intricacy of the task; regular cells have to be sequenced ~30 times and cancer cells 30–50 times. In the slow-but-groundbreaking process, algorithms developed through years of public and private sector research create perfect representations of the patients’ cells in bits and bytes. In the next stage, which takes a few weeks, the raw sequences for healthy and cancerous cells are extrapolated and put through heuristic algorithms to figure out what healthy and cancerous cells look like in each patient. Among them is a driver mutation that primarily fuels the cancer, and passenger mutations that have much less effect. The results from these projects will include the identification of new combination drug targets for disease and the development of diagnostics to determine appropriate individual patient treatments. The parties plan to transform this coherent clinical 3D Data into computer models which link genetic alterations to changes in gene expression to progression-free patient survival times.
The t-test is important because discount furosemide 40mg visa ulterior motive quotes, like the z-test 100 mg furosemide visa blood pressure 6020, the t-test is used for significance testing in a one-sample experiment. In fact, the t-test and the “t-distribution” are used more often in behavioral research. That’s because with the z-test we must know the standard deviation of the raw score population 1σX2. However, usually researchers do not know such things because they’re exploring uncharted areas of behavior. Instead, we usually estimate σX by using the sample data to compute the unbiased, estimated population standard deviation 1sX2. The one-sample t-test is the parametric inferential procedure for a one-sample experiment when the standard deviation of the raw score population must be estimated. Here’s an example: Say that one of those “home-and-gardening/good-housekeeper” magazines describes a test of housekeeping abilities. The magazine is targeted at women, and it reports that the national average score for women is 75 (so their is 75), but it does not report the standard deviation. If we can conclude that men produce one population of scores located at one , but women produce a different population of scores at a different , then we’ve found a relationship in which, as gender changes, test scores change. The statistical hypotheses: Say that we’re being open minded and look for any kind of difference, so we have a two-tailed test. If men are different from women, then the for men will not equal the for women of 75, so Ha is? Check the assumptions: The one-sample t-test is appropriate if we can assume the following about the dependent variable: a. On the other hand, maybe we are being misled by sampling error: Maybe by chance we selected some exceptionally sloppy men for our sample, but men in the population are not different from women, and so our sample actually poorly represents that the male population also has a 5 75. To test this null hypothesis, we use the logic that we’ve used previously: H0 says that the men’s mean represents a population where is 75, so we will create a sampling dis- tribution showing the means that occur by chance when representing this population. Then using the formula for the t-test, we will compute tobt, which will locate our sam- ple mean on this sampling distribution in the same way that z-scores did. The larger the absolute value of tobt, the farther our sample mean is into the tail of the sampling distri- bution. If tobt is beyond tcrit, our sample mean lies in the region of rejection, so we’ll reject that the sample poorly represents the population where is 75. The only novelty here is that tobt is calculated differently than zobt and tcrit comes from the t-distribution. After computing our sample mean, the first step in the z-test was to determine the stan- dard deviation 1σX2 of the raw score population. For the t-test, we could compute the estimated standard deviation 1sX2, but to make your computations simpler, we’ll use the estimated population variance 1s22. Recall that the formula for the estimated popula- X tion variance is 1©X22 ©X2 2 2 N sX 5 N 2 1 The second step of the z-test was to compute the standard error of the mean 1σX2, which is like the “standard deviation” of the sampling distribution. However, because now we are estimating the population variability, we compute the estimated standard error of the mean, which is an estimate of the “standard deviation” of the sampling distribution of means. However, recall that to get any standard devi- ation we first compute the variance and then find its square root. Thus, buried in the above is the extra step of finding the square root of the variance that we then divide by 1N. The third step in the z-test was to compute zobt using the formula X 2 zobt 5 σX This says to find the difference between our sample mean and the in H0 and then divide by the standard error. Likewise, the final step in computing tobt is to use this formula: The formula for the one-sample t-test is X 2 tobt 5 sX Performing the One-Sample t-Test 237 Here, the X is our sample mean, is the mean of the H0 sampling distribution (which equals the value of described in the null hypothesis), and sX is the estimated standard error of the mean. The tobt is like a z-score, however, indicating how far our sample mean is from the of the sampling distribution, when measured in estimated standard error units. Substituting the data into the formula gives X 1©X22 349,281 ©X2 2 39,289 2 2 N 9 sX 5 5 5 60. The t-Distribution and Degrees of Freedom In our housekeeping study, the sample mean produced a tobt of 23. She infinitely draws samples having our N from the raw score population described by H. For each sample she computes X, but she also computes s2 and, ulti- 0 X mately, tobt. Then she plots the usual sampling distribution—a frequency distribution of the sample means—but also labels the X axis using each tobt.
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